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Njal is based on
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Compute-node Hardware
Njal is a heterogeneous cluster based on two classes of compute-nodes.
- a-nodes - 64bit 2.0GHz + Ethernet
- b-nodes - 32bit 933MHz + Myrinet
There are 14 a-nodes and 40 b-nodes.
a-node Hardware
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Processors
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Cores
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Clock Speed
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Brand
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Model
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4
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2.0GHz
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Intel
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Xeon Core2
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|   |
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Memory
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Capacity
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Type
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Speed
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4GB
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DDR
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533MHz
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|   |
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Network
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Type
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Speed
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Brand
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Model
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Ethernet
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1000Mb/sec
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Broadcom
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NetXtreme II BCM5708
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|   |
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Storage
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Capacity
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Interface
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Speed
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Brand
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Model
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80GB
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SATA
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57MB/sec
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Western Digital
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WD800JD-75MS
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b-node Hardware
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Processors
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Cores
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Clock Speed
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Brand
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Model
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2
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933MHz
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Intel
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Pentium III
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|   |
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Memory
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Capacity
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Type
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Speed
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1.5GB
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PC133
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133MHz
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|   |
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Network
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Type
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Speed
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Brand
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Model
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Ethernet
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100Mb/sec
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Intel
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e100
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Myrinet
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1000Mbit/sec
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Myricom
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|   |
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Storage
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Capacity
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Interface
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Speed
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Brand
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Model
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20GB
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ATA-100
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20MB/sec
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Western Digital
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Caviar
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Master-node Hardware
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Processors
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Cores
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Clock Speed
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Brand
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Model
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4
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1.8GHz
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Intel
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Xeon Core2
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|   |
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Memory
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Capacity
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Type
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Speed
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2GB
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DDR
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533MHz
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|   |
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Network
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Type
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Speed
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Brand
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Model
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Ethernet
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1000Mb/sec
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Broadcom
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NetXtreme II BCM5708
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|   |
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Storage
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Capacity
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Interface
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Speed
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Brand
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Model
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80GB
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SAS RAID-5
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177MB/sec
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Seagate
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ST336754SS
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160GB
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SATA RAID-1
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74MB/sec
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Seagate
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ST3160815AS
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Interconnect
Ethernet networking is
provided by the HP ProCurve
switch with 128 Fast Ethernet
ports and 3 Gigabit Ethernet
ports. All ports are
copper. Switch is tolerant to
resets/reboots, usually it
does not need any maintenance
or configuration. One
deficiency - it is not fully
non-blocking, the internal
banchwidth is less than the
sum of the port throughput.
Typical message
roundtrip latency is between
100 and 200 microseconds for
64 byte messages. Maximum
measured NetPIPE TCP/IP
bandwidth is 90 Mbps for Fast
Ethernet and 340 Mbps for
Gigabit Ethernet.
Supplier: RackSaver
Myrinet connects 40 b-nodes.
Each of these nodes has
a Myrinet-2000 card
(M3F-PCI64B-2) connected by a
copper cable to the cross-bar
switch. Routing logic is on
the cards themselves so the
switch is merely an
interconnect with an "On/Off"
switch.
Typical message roundtrip
latency is between 9 and 11
microseconds for 64 byte
messages. Maximum measured
NetPIPE MPI bandwidth is 460
Mbps.
Supplier: Myricom Inc.
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Switches
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Type
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Number of ports
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Latency
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Bandwidth
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HP ProCurve
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128 Fast Ethernet ports and 3 Gigabit Ethernet ports
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100 and 200 microseconds for 64 byte messages
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90 Mbps for Fast Ethernet and 340 Mbps for Gigabit Ethernet
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Myrinet
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9-11 microseconds for 64 byte messages
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460 Mbps
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File Server Hardware
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Processors
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Cores
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Clock Speed
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Brand
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Model
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2
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1.8GHz
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AMD
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Dual-core Opteron
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|   |
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Memory
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Capacity
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Type
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Speed
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2GB
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DDR
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533MHz
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|   |
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Network
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Type
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Speed
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Brand
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Model
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Ethernet
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1000Mb/sec
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Broadcom
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Tigon3
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Storage
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Capacity
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Interface
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Speed
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Brand
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Model
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40GB
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ATA-133
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53MB/sec
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Seagate
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ST340014A
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1TB
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SATA RAID-6
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69MB/sec
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Seagate
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ST3500630NS
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Performance
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